Microbiological monitoring of patients in the infectious intensive care unit


DOI: https://dx.doi.org/10.18565/epidem.2025.15.1.67-73

Orlova O.A., Gusarov V.G., Kamyshova D.A., Petrova L.V., Semenenko T.A.

1) N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia, Moscow, Russia; 2) N.F. Gamaleya National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russia, Moscow, Russia; 3) Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia
Objective. Analysis of microbial colonization data of patients in the intensive care unit (ICU) with assessment of the dynamics of antibacterial resistance.
Materials and methods. An analysis of microbiological monitoring data was performed for 88 patients diagnosed with novel coronavirus infection who were admitted to ICU. Microbiological studies were performed using the standard methodology.
Results. Before admission to the ICU, 27.3% of patients received antimicrobial therapy. The frequency of microbial colonization of various bioloci in patients at admission to the ICU was 93.8% in the contents of the lower respiratory tract, 54.1% in urine, and 35.0% in blood. Normal commensals of the oral cavity and urinary tract were mainly isolated in the contents of the lower respiratory tract and urine. A significant content of Candida fungi was noted – 24.0 and 13.6%, respectively. Staphylococcus spp. were isolated in the blood of patients at admission to the ICU in 71.4% of cases, and Actinomyces spp. In 19.0%. Dynamically, an increase in the frequency of fungal isolation from all loci of patients was noted. Already at admission, some patients (7.6–38.1%) were contaminated with antibiotic-resistant microorganisms; dynamically, a decrease in the isolation of antibiotic-resistant microorganisms isolated from the contents of the lower respiratory tract and blood was noted.
Conclusion. Microbiological monitoring is necessary in the ICU, since it provides early diagnosis of healthcare-associated infections, monitoring the dynamics of the epidemic process and timely prescription of rational antimicrobial therapy.

Literature


1. Дворак C.И., Гусев Д.А., Суборова Т.Н., Захарова Н.Г., Сизова Н.В., Буланьков Ю.И. Оптимизация стартовой эмпирической антибактериальной терапии у больных ВИЧ-инфекцией – пациентов специализированного стационара. Журнал инфектологии 2019; 11(2): 97–106. DOI: 10.22625/2072-6732-2019-11-2-97-1061


Dvorak S.I., Gusev D.A., Suborova T.N., Zakharova N.G., Sizova N.V., Bulankov Yu.I. [Optimization of starting empirical antibacterial therapy in patients with HIV infection – specialized hospital patients]. Journal Infectology 2019; 11(2): 97–106. (In Russ.). DOI: 10.22625/2072-6732-2019-11-2-97-106


2. Бурмистров Е.М., Краснослободцев К.Г., Аветисян Л.Р., Сиянова Е.А., Медведева О.С., Целикина Е.Г. и др. Смешанные бактериально-вирусные инфекции легких у пациентов с муковисцидозом. Пульмонология 2023; 33(4): 488–496. DOI: 10.18093/0869-0189-2023-33-4-488-496


Burmistrov E.M., Krasnoslobodtsev K.G., Avetisyan L.R., Siyanova E.A., Medvedeva O.S., Tselikina E.G. et al. [Mixed bacterial-viral lung infections in patients with cystic fibrosis]. Pulmonologiya 2023; 33(4): 488–496. (In Russ.). DOI: 10.18093/0869-0189-2023-33-4-488-496


3. Тлюстангелова Р.К., Пшеничная Н.Ю., Лизинфельд И.А., Журавлев А.С. Выбор тактики лечения у больных с острыми кишечными инфекциями бактериальной этиологии, имеющих высокий риск развития синдрома раздраженного кишечника. Эпидемиол. инфекц. болезни. Актуал. вопр. 2024; 14(2): 79–86. DOI: 10.18565/epidem.2024.14.2.79-86


Tlyustangelova R.K., Pshenichnaya N.Yu., Lizinfeld I.A., Zhuravlev A.S. [Choice of treatment tactics in patients with acute bacterial intestinal infections who have a high risk of developing irritable bowel syndrome]. Epidemiology and infectious diseases. Current items 2024; 14(2): 79–86. (In Russ.). DOI: 10.18565/epidem.2024.14.2.79-86


4. Николаева И.В., Гайнатуллина Л.Р., Гусева С.Е., Юмагулова Е.Ф., Белова М.Н. Этиологическая структура и антибиотикорезистентность возбудителей сепсиса у больных COVID-19. Практическая медицина 2024; 22(2): 90–95. DOI: 10.32000/2072-1757-2024-2-90-95


Nikolaeva I.V., Gainatullina L.R., Guseva S.E., Yumagulova E.F., Belova M.N. [Etiological structure and antibiotic resistance of sepsis pathogens in patients with COVID-19]. Practical medicine 2024; 22(2): 90–95. (In Russ.). DOI: 10.32000/2072-1757-2024-2-90-95


5. Жукова Э.В., Никитина Г.Ю., Ноздрачева А.В., Орлова О.А., Готвянская Т.П., Бурова А.А. и др. Мультидисциплинарный подход к оценке рисков возникновения инфекций, связанных с оказанием медицинской помощи, в контексте пандемии COVID-19. Эпидемиол. инфекц. болезни. Актуал. вопр. 2022; 12(1): 25–34. DOI: 10.18565/epidem.2022.12.1.25-34


Zhukova E.V., Nikitina G.Yu., Nozdracheva A.V., Orlova O.A., Gotvyanskaya T.P., Burova A.A., Maziy S.A. [Multidisciplinary approach to assessing the risks of healthcare-associated infections in the context of the COVID-19 pandemic]. Epidemiology and infectious diseases. Current items 2022; 12(1): 25–34. (In Russ.). DOI: 10.18565/epidem.2022.12.1.25-34


6. Стрелкова Д.А., Рачина С.А., Кулешов В.Г., Бурмистрова Е.Н., Сычев И.Н., Ананичева Н.А. и др. Микробиологический мониторинг пациентов с COVID- 19 в ОРИТ: проспективное наблюдательное исследование. Клиническая микробиология и антимикробная химиотерапия 2022; 24(3): 274–282. DOI: 10.36488/cmac.2022.3.274282


Strelkova D.A., Rachina S.A., Kuleshov V.G., Burmistrova E.N., Sychev I.N., Ananicheva N.A. et al. [Microbiological monitoring of COVID-19 patients in the ICU: a prospective observational study]. Clinical Microbiology and Antimicrobial Chemotherapy 2022; 24(3): 274–282. (In Russ.). DOI: 10.36488/cmac.2022.3.274282


7. Малкова О.Г., Машаева О.Г., Собетова Г.В., Орлов А.В., Рахимов Р.Т., Втюрина Г.В. и др. Оценка изменений структуры возбудителей инфекций, связанных с оказанием медицинской помощи, в отделениях реанимации и интенсивной терапии в период пандемии новой коронавирусной инфекции (COVID-19). Уральский медицинский журнал 2023; 22(6): 31–42. DOI: 10.52420/2071-5943-2023-22-6-31-42


Malkova O.G., Mashaeva O.G., Sobetova G.V., Orlov A.V., Rakhimov R.T., Vtyurina G.V. et al. [Assessing changes in the pattern of healthcare-associated infectious agents in intensive care units during a novel coronavirus infection pandemic (COVID-19)]. Ural Medical Journal 2023; 22(6): 31–42. (In Russ.). DOI: 10.52420/2071-5943-2023-22-6-31-42


8. Langford B.J., So M., Raybardhan S., Leung V., Soucy J.-P. R., Westwood D. et al. Antibiotic prescribing in patients with COVID-19: rapid review and meta-analysis. Clin. Microbiol. Infect. 2021; 24(4): 520–531. DOI: 10.1016/j.cmi.2020.12.018


9. Du Y., Tu L., Zhu P., Mi M., Wang R., Yang P. et al. Clinical features of 85 fatal cases of COVID-19 from Wuhan: a retrospective observational study. Am. J. Respir. Crit. Care Med. 2020; 201(11): 1372–1379. DOI: 10.1164/rccm.202003-0543OC


10. Rothe K., Feihl S., Schneider J., Wallnöfer F., Wurst M., Lukas M. et al. Rates of bacterial co-infections and antimicrobial use in COVID-19 patients: a retrospective cohort study in light of antibiotic stewardship. Eur. J. Clin. Microbiol. Infect. Dis. 2021; 40(4): 859–869. DOI: 10.1007/s10096-020-04063-8


11. WHO. Clinical Management of COVID-19. 2021. https:// www.who.int/publications/i/item/WHO-2019-nCoV-clinical-2021-1


12. Calderón-Parra J., Muiño-Miguez A., Bendala-Estrada A.D. Inappropriate antibiotic use in the COVID-19 era: Factors associated with inappropriate prescribing and secondary complications. Analysis of the registry SEMI-COVID. PLoS One 2021; 16(5): e0251340. DOI: 10.1371/journal.pone.0251340


13. Lansbury L., Lim B., Baskaran V., Lim W.S. Co-infections in people with COVID-19: a systematic review and meta-analysis. J. Infect. 2020; 81(2): 266–275. DOI: 10.1016/j.jinf.2020.05.046


14. Langford B.J., So M., Raybardhan S., Leung V., Westwood D., MacFadden D.R. et al. Bacterial co-infection and secondary infection in patients with COVID-19: a living rapid review and meta-analysis. Clin. Microbiol. Infect. 2020; 26(12): 1622–1629. DOI: 10.1016/j.cmi.2020.07.016


15. Garcia-Vidal С., Sanjuan G., Moreno-García E., Puerta-Alcalde P., Garcia-Pouton N., Chumbitaet M. et al. Incidence of co-infections and superinfections in hospitalized patients with COVID-19: a retrospective cohort study. Clin. Microbiol. Infect. 2021; 27(1): 83–88. DOI: 10.1016/j.cmi.2020.07.041


16. WHO. Global action plan on antimicrobial resistance. 2015. https://iris.who.int/bitstream/handle/10665/193736/9789241509763_eng.pdf?sequence=1


17. Dudoignon E., Caméléna F., Deniau B., Habay A., Coutrot M., Ressaire Q. et al. Bacterial pneumonia in COVID-19 critically ill patients: a case series. Clin. Infect. Dis. 2020; 72(5): 905–906. DOI: 10.1093/cid/ciaa762


18. Manohar P., Loh B., Nachimuthu R., Hua X., Welburn S.C., Leptihn S. Secondary bacterial infections in patients with viral pneumonia. Front. Med. (Lausanne). 2020; (7): 420. DOI: 10.3389/fmed.2020.00420


19. Hughes S., Troise O., Donaldson H., Mughal N., Moore L.S.P. Bacterial and fungal coinfection among hospitalized patients with COVID-19: a retrospective cohort study in a UK secondary-care setting. Clin. Microbiol. Infect. 2020; 26(10): 1395–1399. DOI: 10.1016/j.cmi.2020.06.025


20. Søvik S., BarrattDue A., Kåsine T., Olasveengen T., Strand M.W., Tveita A.A. et al. Corticosteroids and superinfections in COVID-19 patients on invasive mechanical ventilation. J. Infect. 2022; 85(1): 57–63. DOI: 10.1016/j.jinf.2022.05.015


21. Blonz G., Kouatchet A., Chudeau N., Pontis E., Lorber J., Lemeur A. Epidemiology and microbiology of ventilatorassociated pneumonia in COVID-19 patients: a multicenter retrospective study in 188 patients in an un inundated French region. Crit. Care 2021; 25(1): 72. DOI: 10.1186/S1305402103493-W


22. Shappell C.N., Klompas M., Kanjilal S., Chan Ch., Rhee Ch. Prevalence, clinical characteristics, and outcomes of sepsis caused by severe acute respiratory syndrome coronavirus 2 versus other pathogens in hospitalized patients with COVID- 19. Crit. Care Explor. 2022; 4(5): e0703. DOI: 10.1097/CCE.0000000000000703


23. Полищук И.С., Алешукина А.В., Донцов Д.В., Маркова К.Г., Березинская И.С., Твердохлебова Т.И. Анализ микробного профиля мокроты и содержания в ней цитокинов ИЛ-4, ИЛ-6, ИЛ-10, ИФН-γ у больных внебольничной пневмонией в период пандемии COVID-19. Эпидемиол. инфекц. болезни. Актуал. вопр. 2024; 14(1): 43–48. DOI: 10.18565/epidem.2024.14.1.43-8


Polishchuk I.S., Aleshukina A.V., Dontsov D.V., Markova K.G., Berezinskaya I.S., Tverdokhlebova T.I. [Analysis of the microbial profile of sputum and the IL-4, IL-6, IL-10, IFN-γ cytokine levels in patients with community-acquired pneumonia during the COVID-19]. Epidemiology and infectious diseases. Current items 2024; 14(1): 43–48. (In Russ.). DOI: 10.18565/epidem.2024.14.1.43-8


24. Gangneux J.P., Dannaoui E., Fekkar A., Luyt C.E., Botterel F., De Prost N. et al. Fungal infections in mechanically ventilated patients with COVID19 during the first wave: the French multicentre MYCOVID study. Lancet Respir. Med. 2022; 10(2): 180–190. DOI: 10.1016/S22132600(21)00442-2


25. Катаева Л.В., Вакарина А.А., Степанова Т.Ф., Степанова К.Б. Микробиота нижних дыхательных путей при внебольничных пневмониях, в том числе ассоциированных c SARS-CoV-2. Журнал микробиологии, эпидемиологии и иммунобиологии 2021; 98(5): 528–537. DOI: 10.36233/0372-9311-10739


Kataeva L.V., Vakarina A.A., Stepanova T.F., Stepanova K.B. [Microbiota of the lower respiratory tract in community-acquired pneumonia, including cases associated with SARS-CoV-2]. Journal of Microbiology, Epidemiology and Immunobiology 2021; 98(5): 528–537. (In Russ.). DOI: 10.36233/0372-9311-10739


26. Матиевская Н.В., Волосач О.С., Кузьмич И.А. Синегнойная инфекция у пациентов стационаров различного профиля: клинические и микробиологические аспекты. Эпидемиол. инфекц. болезни. Актуал. вопр. 2022; 12(1): 87–92. DOI: 10.18565/epidem.2022.12.1.87-92


Matievskaya N.V., Volosach O.S., Kuzmich I.A. [Pseudomonas aeruginosa infection in inpatients of different profiles: clinical and microbiological aspects]. Еpidemiology and infectious diseases. Current items 2022; 12(1): 87–92. (In Russ.). DOI: 10.18565/epidem.2022.12.1.87-92


27. Попова А.Ю., Ежлова Е.Б., Демина Ю.В., Носков А.К., Ковалев Е.В., Чемисова О.С. и др. Особенности этиологии внебольничных пневмоний, ассоциированных с COVID-19. Проблемы особо опасных инфекций 2020; (4): 99–105. DOI: 10.21055/0370-1069-2020-4-99-10541


Popova A.Yu., Ezhlova E.B., Demina Yu.V., Noskov A.K., Kovalev E.V., Chemisova O.S. et al. [Features of Etiology of Community-Acquired Pneumonia Associated with COVID-19]. Problems of Particularly Dangerous Infections 2020; (4): 99–105. (In Russ.). DOI:10.21055/0370-1069-2020-4-99-10541


28. Moreno-García E., Puerta-Alcalde P., Letona L., Meira F., Dueñas G., Chumbita M. et al. COVID-19-researcher group. Bacterial co-infection at hospital admission in patients with COVID-19. Int. J. Infect. Dis. 2022; 118: 197–202. DOI: 10.1016/j.ijid.2022.03.003


About the Autors


Oksana A. Orlova, MD, Head, Еpidemiology Department, N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia; Senior Researcher, Laboratory of Opportunistic Infections, N.F.Gamaleya National Research Centre for Epidemiology and Microbiology, Ministry of Health of the Russia; Leading Researcher, Laboratory of Healthcare-Associated Infections, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being; oksana_orlova@bk.ru; https://orcid.org/0000-0002-6701-1252
Vitaly G. Gusarov, МD, Associate Professor, Chief Physician of the Hospital, N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia; Head, Department of Anesthesiology and Resuscitation, Institute for Advanced Medical Training, N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia; Moscow, Russia; gusarovvg@pirogov-center.ru; https://orcid.org/0000-0002-2900-1459
Darya A. Kamyshova, Clinical Pharmacologist, Head, Department of Clinical Pharmacology, N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia; Assistant Professor, Department of Internal Medicine, Institute for Advanced Medical Training, N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia, Moscow, Russia; kamyshovada@pirogov-center.ru; https://orcid.org/0000-0003-3084-9294
Ludmila V. Petrova, Bacteriologist, Head, Laboratory of Microbiology, N.I. Pirogov National Medical and Surgical Center, Ministry of Health of the Russia, Moscow, Russia; petrovalv@pirogov-center.ru; https://orcid.org/0000-0001-6221-9743
Professor Tatiana A. Semenenko,  MD, Head, Epidemiology Department, N.F. Gamaleya Federal Research Center for Epidemiology and Microbiology, Ministry of Health of the Russia;   Рrofessor, Department of Infectology and Virology, Institute of Professional Education, I.M. Sechenov First Moscow State Medical University, Ministry of Health of the Russia (Sechenov University), Moscow, Russia; semenenko@gamaleya.org; https://orcid.org/0000-0002-6686-9011


Similar Articles


Бионика Медиа