Analysis of a genetic diversity of Kemerovo virus and its phylogenetic relationships to the Great Island virus group


DOI: https://dx.doi.org/10.18565/epidem.2018.2.17-27

Safonova M.V., Dedkov V.G., Gmyl A.P. , Karganova G.G., Speranskaya A.S., Neverov A.D., Fedonin G.G., Pimkina E.V., Valdokhina A.V., Khafizov K.F., Samokhina E.N., Shipulin G.A.

1 Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; 2 Pasteur Saint Petersburg Research Institute of Epidemiology and Microbiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Saint Petersburg, Russia; 3 I.M. Sechenov First Moscow State Medical University (Sechenov University), Ministry of Health of Russia, Moscow, Russia; 4 M.P. Chumakov Federal Research Center for Study and Design of Immunobiological Preparations, Russian Academy of Sciences, Moscow, Russia; 5 M.V. Lomonosov Moscow State University, Moscow, Russia
Kemerovo virus is an arbovirus belonging to the genus Orbivirus of the family Reoviridae. It is able to cause a human disease with symptoms of meningoencephalitis. There are scarce current data on the genetic diversity of Kemerovo virus, its basic epidemiological characteristics, and its contribution to the pattern of tick-borne infections. To study the genetic diversity of the virus and its relationship to related viruses, representative members of the Great Island virus group, the investigators carried out genome sequencing of 10 Kemerovo virus strains isolated from different sources in the Russian Federation in 1962 to 1975 and a phylogenetic analysis of the obtained nucleotide sequences. The percent nucleotide identity of the representatives of the Great Island virus group was determined by the segment encoding the sequence of the protein VP3. Based on the findings, the authors discuss the genetic relationship of Great Island viruses and the possible ways of their distribution.
Keywords: a Great Island virus group, orbiviruses, Trubeč, Kemerovo virus
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For citations: Safonova M.V., Dedkov V.G., Gmyl A.P. , Karganova G.G., Speranskaya A.S., Neverov A.D., Fedonin G.G., Pimkina E.V., Valdokhina A.V., Khafizov K.F., Samokhina E.N., Shipulin G.A. Analysis of a genetic diversity of Kemerovo virus and its phylogenetic relationships to the Great Island virus group. Èpidemiologiâ i infekcionnye bolezni. Аktual’nye voprosy 2018; (2):17–27


About the Autors

For correspondence:
Marina V. Safonova, Researcher, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Address: 3a, Novogireevskaya St., Moscow 111123, Russia
Telephone: +7(495) 672-10-69
E-mail: marina-iris@mail.ru
Information about the authors:
Vladimir G. Dedkov, Cand. Med. Sci., Deputy Director for Research, L. Pasteur Research Institute of Epidemiology and Microbiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Saint-Petersburg, Russia; e-mail: vdedkov@cmd.su
Anatoly P. Gmyl, Cand. Biol. Sci., Associate Professor, Department of Organization and Technology of Immunobiological Preparations, I.M. Sechenov First Moscow State Medical University (Sechenov University), Ministry of Health of the Russia; Head, Laboratory of Biochemistry, M.P. Chumakov Federal Scientific Center for Research and Development of Immunоbiological Products, Russian Academy of Sciences, Moscow, Russia
Рrof. Galina G. Karganova, BD, Нead, Laboratory of Аrboviruses, M.P. Chumakov Federal Scientific Center for Research and Development of Immunоbiological Products, Russian Academy of Sciences; Рrofessor, Department of Virology, Faculty of Biology, M.V. Lomonosov Moscow State University Moscow, Russia; е-mail: karganova@bk.ru
Anna S. Speranskaya, Cand. Biol. Sci., Researcher, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: anna.speranskaya@pcr.ms
Alexey D. Neverov, Cand. Biol. Sci., Head, Group of Bioinformatics, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: neva@cmd.su
Gennady G Fedonin, Cand. Phys. Mat. Sci., Bioinformatic Programmer, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: gennady.fedonin@gmail.com
Anna V. Valdokhina, Junior Researcher, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: anna_valdokhina@yandex.ru
Ekaterina V. Pimkina, Junior Researcher, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: tsybina.katja@gmail.com
Kamil F. Khafisov, Cand. Med. Sci., Research Group for Development of New Diagnostic Methods Based on Next-Generation Sequencing Technology, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: khafizov@cmd.su
Evgeniya N. Samokhina, Researcher, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: Yumi@cmd.su
German A. Shipulin, Cand. Med. Sci., Head, Department of Molecular Diagnostic and Epidemiology, Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being, Moscow, Russia; e-mail: german@pcr.ru


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